KSHV_ORF73_KSHV_ORF74
Monomer Prediction KSHV_ORF73
Monomer Prediction KSHV_ORF74

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1, ipTM = 0.29

 

Model rank 2, ipTM = 0.24

 

Model rank 3, ipTM = 0.24

 

Model rank 4, ipTM = 0.23

 

Model rank 5, ipTM = 0.19

 

Download files:
KSHV_ORF73_KSHV_ORF74_rank_001.pdb
KSHV_ORF73_KSHV_ORF74_rank_002.pdb
KSHV_ORF73_KSHV_ORF74_rank_003.pdb
KSHV_ORF73_KSHV_ORF74_rank_004.pdb
KSHV_ORF73_KSHV_ORF74_rank_005.pdb
KSHV_ORF73_KSHV_ORF74_coverage.png
KSHV_ORF73_KSHV_ORF74_plddt.png
KSHV_ORF73_KSHV_ORF74_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

KSHV_ORF73_KSHV_ORF75
Monomer Prediction KSHV_ORF73
Monomer Prediction KSHV_ORF75

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1, ipTM = 0.57

 

Model rank 2, ipTM = 0.51

 

Model rank 3, ipTM = 0.24

 

Model rank 4, ipTM = 0.24

 

Model rank 5, ipTM = 0.22

 

Download files:
KSHV_ORF73_KSHV_ORF75_rank_001.pdb
KSHV_ORF73_KSHV_ORF75_rank_002.pdb
KSHV_ORF73_KSHV_ORF75_rank_003.pdb
KSHV_ORF73_KSHV_ORF75_rank_004.pdb
KSHV_ORF73_KSHV_ORF75_rank_005.pdb
KSHV_ORF73_KSHV_ORF75_coverage.png
KSHV_ORF73_KSHV_ORF75_plddt.png
KSHV_ORF73_KSHV_ORF75_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

KSHV_ORF73_KSHV_ORF8
Monomer Prediction KSHV_ORF73
Monomer Prediction KSHV_ORF8

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1, ipTM = 0.21

 

Model rank 2, ipTM = 0.19

 

Model rank 3, ipTM = 0.19

 

Model rank 4, ipTM = 0.19

 

Model rank 5, ipTM = 0.19

 

Download files:
KSHV_ORF73_KSHV_ORF8_rank_001.pdb
KSHV_ORF73_KSHV_ORF8_rank_002.pdb
KSHV_ORF73_KSHV_ORF8_rank_003.pdb
KSHV_ORF73_KSHV_ORF8_rank_004.pdb
KSHV_ORF73_KSHV_ORF8_rank_005.pdb
KSHV_ORF73_KSHV_ORF8_coverage.png
KSHV_ORF73_KSHV_ORF8_plddt.png
KSHV_ORF73_KSHV_ORF8_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

KSHV_ORF73_KSHV_ORF9
Monomer Prediction KSHV_ORF73
Monomer Prediction KSHV_ORF9

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1, ipTM = 0.27

 

Model rank 2, ipTM = 0.22

 

Model rank 3, ipTM = 0.21

 

Model rank 4, ipTM = 0.2

 

Model rank 5, ipTM = 0.2

 

Download files:
KSHV_ORF73_KSHV_ORF9_rank_001.pdb
KSHV_ORF73_KSHV_ORF9_rank_002.pdb
KSHV_ORF73_KSHV_ORF9_rank_003.pdb
KSHV_ORF73_KSHV_ORF9_rank_004.pdb
KSHV_ORF73_KSHV_ORF9_rank_005.pdb
KSHV_ORF73_KSHV_ORF9_coverage.png
KSHV_ORF73_KSHV_ORF9_plddt.png
KSHV_ORF73_KSHV_ORF9_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

KSHV_ORF74_KSHV_ORF75
Monomer Prediction KSHV_ORF74
Monomer Prediction KSHV_ORF75

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1, ipTM = 0.25

 

Model rank 2, ipTM = 0.21

 

Model rank 3, ipTM = 0.2

 

Model rank 4, ipTM = 0.2

 

Model rank 5, ipTM = 0.2

 

Download files:
KSHV_ORF74_KSHV_ORF75_rank_001.pdb
KSHV_ORF74_KSHV_ORF75_rank_002.pdb
KSHV_ORF74_KSHV_ORF75_rank_003.pdb
KSHV_ORF74_KSHV_ORF75_rank_004.pdb
KSHV_ORF74_KSHV_ORF75_rank_005.pdb
KSHV_ORF74_KSHV_ORF75_coverage.png
KSHV_ORF74_KSHV_ORF75_plddt.png
KSHV_ORF74_KSHV_ORF75_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

KSHV_ORF74_KSHV_ORF9
Monomer Prediction KSHV_ORF74
Monomer Prediction KSHV_ORF9

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1, ipTM = 0.21

 

Model rank 2, ipTM = 0.2

 

Model rank 3, ipTM = 0.19

 

Model rank 4, ipTM = 0.19

 

Model rank 5, ipTM = 0.19

 

Download files:
KSHV_ORF74_KSHV_ORF9_rank_001.pdb
KSHV_ORF74_KSHV_ORF9_rank_002.pdb
KSHV_ORF74_KSHV_ORF9_rank_003.pdb
KSHV_ORF74_KSHV_ORF9_rank_004.pdb
KSHV_ORF74_KSHV_ORF9_rank_005.pdb
KSHV_ORF74_KSHV_ORF9_coverage.png
KSHV_ORF74_KSHV_ORF9_plddt.png
KSHV_ORF74_KSHV_ORF9_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

KSHV_ORF75_KSHV_ORF75
Monomer Prediction KSHV_ORF75
Monomer Prediction KSHV_ORF75

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1, ipTM = 0.29

 

Model rank 2, ipTM = 0.27

 

Model rank 3, ipTM = 0.25

 

Model rank 4, ipTM = 0.24

 

Model rank 5, ipTM = 0.23

 

Download files:
KSHV_ORF75_KSHV_ORF75_rank_001.pdb
KSHV_ORF75_KSHV_ORF75_rank_002.pdb
KSHV_ORF75_KSHV_ORF75_rank_003.pdb
KSHV_ORF75_KSHV_ORF75_rank_004.pdb
KSHV_ORF75_KSHV_ORF75_rank_005.pdb
KSHV_ORF75_KSHV_ORF75_coverage.png
KSHV_ORF75_KSHV_ORF75_plddt.png
KSHV_ORF75_KSHV_ORF75_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

KSHV_ORF75_KSHV_ORF8
Monomer Prediction KSHV_ORF75
Monomer Prediction KSHV_ORF8

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1, ipTM = 0.26

 

Model rank 2, ipTM = 0.22

 

Model rank 3, ipTM = 0.22

 

Model rank 4, ipTM = 0.21

 

Model rank 5, ipTM = 0.2

 

Download files:
KSHV_ORF75_KSHV_ORF8_rank_001.pdb
KSHV_ORF75_KSHV_ORF8_rank_002.pdb
KSHV_ORF75_KSHV_ORF8_rank_003.pdb
KSHV_ORF75_KSHV_ORF8_rank_004.pdb
KSHV_ORF75_KSHV_ORF8_rank_005.pdb
KSHV_ORF75_KSHV_ORF8_coverage.png
KSHV_ORF75_KSHV_ORF8_plddt.png
KSHV_ORF75_KSHV_ORF8_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

KSHV_ORF75_KSHV_ORF9
Monomer Prediction KSHV_ORF75
Monomer Prediction KSHV_ORF9

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1, ipTM = 0.45

 

Model rank 2, ipTM = 0.37

 

Model rank 3, ipTM = 0.33

 

Model rank 4, ipTM = 0.29

 

Model rank 5, ipTM = 0.22

 

Download files:
KSHV_ORF75_KSHV_ORF9_rank_001.pdb
KSHV_ORF75_KSHV_ORF9_rank_002.pdb
KSHV_ORF75_KSHV_ORF9_rank_003.pdb
KSHV_ORF75_KSHV_ORF9_rank_004.pdb
KSHV_ORF75_KSHV_ORF9_rank_005.pdb
KSHV_ORF75_KSHV_ORF9_coverage.png
KSHV_ORF75_KSHV_ORF9_plddt.png
KSHV_ORF75_KSHV_ORF9_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

KSHV_ORF7_KSHV_ORF73
Monomer Prediction KSHV_ORF7
Monomer Prediction KSHV_ORF73

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1, ipTM = 0.43

 

Model rank 2, ipTM = 0.32

 

Model rank 3, ipTM = 0.27

 

Model rank 4, ipTM = 0.27

 

Model rank 5, ipTM = 0.24

 

Download files:
KSHV_ORF7_KSHV_ORF73_rank_001.pdb
KSHV_ORF7_KSHV_ORF73_rank_002.pdb
KSHV_ORF7_KSHV_ORF73_rank_003.pdb
KSHV_ORF7_KSHV_ORF73_rank_004.pdb
KSHV_ORF7_KSHV_ORF73_rank_005.pdb
KSHV_ORF7_KSHV_ORF73_coverage.png
KSHV_ORF7_KSHV_ORF73_plddt.png
KSHV_ORF7_KSHV_ORF73_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2