Author Archives: jens.bosse

US27_UL99

US27_UL99

Sequence coverage pIDDT Predicted alignment error (PAE)

Model 1

 

Model 2

 

Model 3

 

Model 4

 

Model 5

 

Download files:
US27_UL99_unrelaxed_rank_1.pdb
US27_UL99_unrelaxed_rank_2.pdb
US27_UL99_unrelaxed_rank_3.pdb
US27_UL99_unrelaxed_rank_4.pdb
US27_UL99_unrelaxed_rank_5.pdb
US27_UL99_coverage.png
US27_UL99_PAE.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

UL25_UL55

UL25_UL55

Sequence coverage pIDDT Predicted alignment error (PAE)

Model 1

 

Model 2

 

Model 3

 

Model 4

 

Model 5

 

Download files:
UL25_UL55_unrelaxed_rank_1.pdb
UL25_UL55_unrelaxed_rank_2.pdb
UL25_UL55_unrelaxed_rank_3.pdb
UL25_UL55_unrelaxed_rank_4.pdb
UL25_UL55_unrelaxed_rank_5.pdb
UL25_UL55_coverage.png
UL25_UL55_PAE.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

UL32_UL122

UL32_UL122

Sequence coverage pIDDT Predicted alignment error (PAE)

Model 1

 

Model 2

 

Model 3

 

Model 4

 

Model 5

 

Download files:
UL32_UL122_unrelaxed_rank_1.pdb
UL32_UL122_unrelaxed_rank_2.pdb
UL32_UL122_unrelaxed_rank_3.pdb
UL32_UL122_unrelaxed_rank_4.pdb
UL32_UL122_unrelaxed_rank_5.pdb
UL32_UL122_coverage.png
UL32_UL122_PAE.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

UL33_UL83

UL33_UL83

Sequence coverage pIDDT Predicted alignment error (PAE)

Model 1

 

Model 2

 

Model 3

 

Model 4

 

Model 5

 

Download files:
UL33_UL83_unrelaxed_rank_1.pdb
UL33_UL83_unrelaxed_rank_2.pdb
UL33_UL83_unrelaxed_rank_3.pdb
UL33_UL83_unrelaxed_rank_4.pdb
UL33_UL83_unrelaxed_rank_5.pdb
UL33_UL83_coverage.png
UL33_UL83_PAE.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

UL35_UL122

UL35_UL122

Sequence coverage pIDDT Predicted alignment error (PAE)

Model 1

 

Model 2

 

Model 3

 

Model 4

 

Model 5

 

Download files:
UL35_UL122_unrelaxed_rank_1.pdb
UL35_UL122_unrelaxed_rank_2.pdb
UL35_UL122_unrelaxed_rank_3.pdb
UL35_UL122_unrelaxed_rank_4.pdb
UL35_UL122_unrelaxed_rank_5.pdb
UL35_UL122_coverage.png
UL35_UL122_PAE.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

UL38_UL38

UL38_UL38

Sequence coverage pIDDT Predicted alignment error (PAE)

Model 1

 

Model 2

 

Model 3

 

Model 4

 

Model 5

 

Download files:
UL38_UL38_unrelaxed_rank_1.pdb
UL38_UL38_unrelaxed_rank_2.pdb
UL38_UL38_unrelaxed_rank_3.pdb
UL38_UL38_unrelaxed_rank_4.pdb
UL38_UL38_unrelaxed_rank_5.pdb
UL38_UL38_coverage.png
UL38_UL38_PAE.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

UL47_UL83

UL47_UL83

Sequence coverage pIDDT Predicted alignment error (PAE)

Model 1

 

Model 2

 

Model 3

 

Model 4

 

Model 5

 

Download files:
UL47_UL83_unrelaxed_rank_1.pdb
UL47_UL83_unrelaxed_rank_2.pdb
UL47_UL83_unrelaxed_rank_3.pdb
UL47_UL83_unrelaxed_rank_4.pdb
UL47_UL83_unrelaxed_rank_5.pdb
UL47_UL83_coverage.png
UL47_UL83_PAE.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

UL48_UL83

UL48_UL83

Sequence coverage pIDDT Predicted alignment error (PAE)

Model 1

 

Model 2

 

Model 3

 

Model 4

 

Model 5

 

Download files:
UL48_UL83_unrelaxed_rank_1.pdb
UL48_UL83_unrelaxed_rank_2.pdb
UL48_UL83_unrelaxed_rank_3.pdb
UL48_UL83_unrelaxed_rank_4.pdb
UL48_UL83_unrelaxed_rank_5.pdb
UL48_UL83_coverage.png
UL48_UL83_PAE.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

UL82_UL82

UL82_UL82

Sequence coverage pIDDT Predicted alignment error (PAE)

Model 1

 

Model 2

 

Model 3

 

Model 4

 

Model 5

 

Download files:
UL82_UL82_unrelaxed_rank_1.pdb
UL82_UL82_unrelaxed_rank_2.pdb
UL82_UL82_unrelaxed_rank_3.pdb
UL82_UL82_unrelaxed_rank_4.pdb
UL82_UL82_unrelaxed_rank_5.pdb
UL82_UL82_coverage.png
UL82_UL82_PAE.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

UL84_UL84

UL84_UL84

Sequence coverage pIDDT Predicted alignment error (PAE)

Model 1

 

Model 2

 

Model 3

 

Model 4

 

Model 5

 

Download files:
UL84_UL84_unrelaxed_rank_1.pdb
UL84_UL84_unrelaxed_rank_2.pdb
UL84_UL84_unrelaxed_rank_3.pdb
UL84_UL84_unrelaxed_rank_4.pdb
UL84_UL84_unrelaxed_rank_5.pdb
UL84_UL84_coverage.png
UL84_UL84_PAE.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2