We have just updated our HerpesFold interactive table. The table, which previously contained predictions for HSV-1 strain 17 (UP000009294), HCMV strain Merlin (UP000000938), and KSHV strain GK18 (UP000000942), now also provides predictions for EBV strain B95-8 (UP000153037). This new version is also using an overall better annotation.
AlphaFold prediction of EBV BGLF5 colored by pLDDT (red=good)
This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829
Predictions were run with Colabfold by the Steinegger lab: Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all. Nature Methods (2022) doi: 10.1038/s41592-022-01488-1
Foldseek is developed by the by the Steinegger lab: van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search. bioRxiv (2022) doi: 10.1101/2022.02.07.479398
Alphafold2 was developed by Deepmind: Jumper et al. “Highly accurate protein structure prediction with AlphaFold.” Nature (2021) doi:Âxa010.1038/s41586-021-03819-2
This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829
Predictions were run with Colabfold by the Steinegger lab: Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all. Nature Methods (2022) doi: 10.1038/s41592-022-01488-1
Foldseek is developed by the by the Steinegger lab: van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search. bioRxiv (2022) doi: 10.1101/2022.02.07.479398
Alphafold2 was developed by Deepmind: Jumper et al. “Highly accurate protein structure prediction with AlphaFold.” Nature (2021) doi:Âxa010.1038/s41586-021-03819-2
This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829
Predictions were run with Colabfold by the Steinegger lab: Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all. Nature Methods (2022) doi: 10.1038/s41592-022-01488-1
Foldseek is developed by the by the Steinegger lab: van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search. bioRxiv (2022) doi: 10.1101/2022.02.07.479398
Alphafold2 was developed by Deepmind: Jumper et al. “Highly accurate protein structure prediction with AlphaFold.” Nature (2021) doi:Âxa010.1038/s41586-021-03819-2
This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829
Predictions were run with Colabfold by the Steinegger lab: Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all. Nature Methods (2022) doi: 10.1038/s41592-022-01488-1
Foldseek is developed by the by the Steinegger lab: van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search. bioRxiv (2022) doi: 10.1101/2022.02.07.479398
Alphafold2 was developed by Deepmind: Jumper et al. “Highly accurate protein structure prediction with AlphaFold.” Nature (2021) doi:Âxa010.1038/s41586-021-03819-2
This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829
Predictions were run with Colabfold by the Steinegger lab: Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all. Nature Methods (2022) doi: 10.1038/s41592-022-01488-1
Foldseek is developed by the by the Steinegger lab: van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search. bioRxiv (2022) doi: 10.1101/2022.02.07.479398
Alphafold2 was developed by Deepmind: Jumper et al. “Highly accurate protein structure prediction with AlphaFold.” Nature (2021) doi:Âxa010.1038/s41586-021-03819-2
This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829
Predictions were run with Colabfold by the Steinegger lab: Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all. Nature Methods (2022) doi: 10.1038/s41592-022-01488-1
Foldseek is developed by the by the Steinegger lab: van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search. bioRxiv (2022) doi: 10.1101/2022.02.07.479398
Alphafold2 was developed by Deepmind: Jumper et al. “Highly accurate protein structure prediction with AlphaFold.” Nature (2021) doi:Âxa010.1038/s41586-021-03819-2
This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829
Predictions were run with Colabfold by the Steinegger lab: Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all. Nature Methods (2022) doi: 10.1038/s41592-022-01488-1
Foldseek is developed by the by the Steinegger lab: van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search. bioRxiv (2022) doi: 10.1101/2022.02.07.479398
Alphafold2 was developed by Deepmind: Jumper et al. “Highly accurate protein structure prediction with AlphaFold.” Nature (2021) doi:Âxa010.1038/s41586-021-03819-2
This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829
Predictions were run with Colabfold by the Steinegger lab: Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all. Nature Methods (2022) doi: 10.1038/s41592-022-01488-1
Foldseek is developed by the by the Steinegger lab: van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search. bioRxiv (2022) doi: 10.1101/2022.02.07.479398
Alphafold2 was developed by Deepmind: Jumper et al. “Highly accurate protein structure prediction with AlphaFold.” Nature (2021) doi:Âxa010.1038/s41586-021-03819-2
This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829
Predictions were run with Colabfold by the Steinegger lab: Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all. Nature Methods (2022) doi: 10.1038/s41592-022-01488-1
Foldseek is developed by the by the Steinegger lab: van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. Foldseek: fast and accurate protein structure search. bioRxiv (2022) doi: 10.1101/2022.02.07.479398
Alphafold2 was developed by Deepmind: Jumper et al. “Highly accurate protein structure prediction with AlphaFold.” Nature (2021) doi:Âxa010.1038/s41586-021-03819-2