Author Archives: jens.bosse

MHV68_ORF67

MHV68_ORF67

O41968

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1

 

Model rank 2

 

Model rank 3

 

Model rank 4

 

Model rank 5

 

Download files:
MHV68_ORF67_rank_001.pdb
MHV68_ORF67_rank_002.pdb
MHV68_ORF67_rank_003.pdb
MHV68_ORF67_rank_004.pdb
MHV68_ORF67_rank_005.pdb
MHV68_ORF67_coverage.png
MHV68_ORF67_plddt.png
MHV68_ORF67_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

MHV68_ORF67A

MHV68_ORF67A

Q9QAI0

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1

 

Model rank 2

 

Model rank 3

 

Model rank 4

 

Model rank 5

 

Download files:
MHV68_ORF67A_rank_001.pdb
MHV68_ORF67A_rank_002.pdb
MHV68_ORF67A_rank_003.pdb
MHV68_ORF67A_rank_004.pdb
MHV68_ORF67A_rank_005.pdb
MHV68_ORF67A_coverage.png
MHV68_ORF67A_plddt.png
MHV68_ORF67A_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

MHV68_ORF68

MHV68_ORF68

Q9QAH9

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1

 

Model rank 2

 

Model rank 3

 

Model rank 4

 

Model rank 5

 

Download files:
MHV68_ORF68_rank_001.pdb
MHV68_ORF68_rank_002.pdb
MHV68_ORF68_rank_003.pdb
MHV68_ORF68_rank_004.pdb
MHV68_ORF68_rank_005.pdb
MHV68_ORF68_coverage.png
MHV68_ORF68_plddt.png
MHV68_ORF68_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

MHV68_ORF69

MHV68_ORF69

O41970

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1

 

Model rank 2

 

Model rank 3

 

Model rank 4

 

Model rank 5

 

Download files:
MHV68_ORF69_rank_001.pdb
MHV68_ORF69_rank_002.pdb
MHV68_ORF69_rank_003.pdb
MHV68_ORF69_rank_004.pdb
MHV68_ORF69_rank_005.pdb
MHV68_ORF69_coverage.png
MHV68_ORF69_plddt.png
MHV68_ORF69_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

MHV68_ORF7

MHV68_ORF7

O41929

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1

 

Model rank 2

 

Model rank 3

 

Model rank 4

 

Model rank 5

 

Download files:
MHV68_ORF7_rank_001.pdb
MHV68_ORF7_rank_002.pdb
MHV68_ORF7_rank_003.pdb
MHV68_ORF7_rank_004.pdb
MHV68_ORF7_rank_005.pdb
MHV68_ORF7_coverage.png
MHV68_ORF7_plddt.png
MHV68_ORF7_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

MHV68_ORF73

MHV68_ORF73

O41974

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1

 

Model rank 2

 

Model rank 3

 

Model rank 4

 

Model rank 5

 

Download files:
MHV68_ORF73_rank_001.pdb
MHV68_ORF73_rank_002.pdb
MHV68_ORF73_rank_003.pdb
MHV68_ORF73_rank_004.pdb
MHV68_ORF73_rank_005.pdb
MHV68_ORF73_coverage.png
MHV68_ORF73_plddt.png
MHV68_ORF73_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

MHV68_ORF74

MHV68_ORF74

O41975

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1

 

Model rank 2

 

Model rank 3

 

Model rank 4

 

Model rank 5

 

Download files:
MHV68_ORF74_rank_001.pdb
MHV68_ORF74_rank_002.pdb
MHV68_ORF74_rank_003.pdb
MHV68_ORF74_rank_004.pdb
MHV68_ORF74_rank_005.pdb
MHV68_ORF74_coverage.png
MHV68_ORF74_plddt.png
MHV68_ORF74_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

MHV68_ORF75a

MHV68_ORF75a

O41978

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1

 

Model rank 2

 

Model rank 3

 

Model rank 4

 

Model rank 5

 

Download files:
MHV68_ORF75a_rank_001.pdb
MHV68_ORF75a_rank_002.pdb
MHV68_ORF75a_rank_003.pdb
MHV68_ORF75a_rank_004.pdb
MHV68_ORF75a_rank_005.pdb
MHV68_ORF75a_coverage.png
MHV68_ORF75a_plddt.png
MHV68_ORF75a_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

MHV68_ORF75b

MHV68_ORF75b

O41977

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1

 

Model rank 2

 

Model rank 3

 

Model rank 4

 

Model rank 5

 

Download files:
MHV68_ORF75b_rank_001.pdb
MHV68_ORF75b_rank_002.pdb
MHV68_ORF75b_rank_003.pdb
MHV68_ORF75b_rank_004.pdb
MHV68_ORF75b_rank_005.pdb
MHV68_ORF75b_coverage.png
MHV68_ORF75b_plddt.png
MHV68_ORF75b_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2

MHV68_ORF75c

MHV68_ORF75c

O41976

Sequence coverage

pLDDT

Predicted Alignment Error (PAE)


Model rank 1

 

Model rank 2

 

Model rank 3

 

Model rank 4

 

Model rank 5

 

Download files:
MHV68_ORF75c_rank_001.pdb
MHV68_ORF75c_rank_002.pdb
MHV68_ORF75c_rank_003.pdb
MHV68_ORF75c_rank_004.pdb
MHV68_ORF75c_rank_005.pdb
MHV68_ORF75c_coverage.png
MHV68_ORF75c_plddt.png
MHV68_ORF75c_pae.png

Search for similar structures using Foldseek:




This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1

Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2