KSHV_ORF39_KSHV_ORF50
Monomer Prediction KSHV_ORF39
Monomer Prediction KSHV_ORF50
Sequence coverage
pLDDT
Predicted Alignment Error (PAE)
Model rank 1, ipTM = 0.2
Model rank 2, ipTM = 0.17
Model rank 3, ipTM = 0.16
Model rank 4, ipTM = 0.16
Model rank 5, ipTM = 0.14
Download files:
KSHV_ORF39_KSHV_ORF50_rank_001.pdb
KSHV_ORF39_KSHV_ORF50_rank_002.pdb
KSHV_ORF39_KSHV_ORF50_rank_003.pdb
KSHV_ORF39_KSHV_ORF50_rank_004.pdb
KSHV_ORF39_KSHV_ORF50_rank_005.pdb
KSHV_ORF39_KSHV_ORF50_coverage.png
KSHV_ORF39_KSHV_ORF50_plddt.png
KSHV_ORF39_KSHV_ORF50_pae.png
Search for similar structures using Foldseek:
This page uses 3Dmol.js: Molecular visualization with WebGL by Nicholas Rego and David Koes.
Bioinformatics (2015) doi: 10.1093/bioinformatics/btu829
Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. “ColabFold: Making protein folding accessible to all”.
Nature Methods (2022) doi: 10.1038/s41592-022-01488-1
Foldseek is developed by the Steinegger lab:
van Kempen M, Kim S, Tumescheit C, Mirdita M, Söding J, and Steinegger M. “Foldseek: fast and accurate protein structure search”.
bioRxiv (2022) doi: 10.1101/2022.02.07.479398
Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.”
Nature (2021) doi: 10.1038/s41586-021-03819-2