This table gives interactive access to all Alphafold structures of HSV-1 strain 17+ (Uniprot proteome UP000009294), HCMV strain Merlin (Uniprot proteome UP000000938) as well as KSHV strain GK18 (Uniprot proteome UP000000942) visualized by 3Dmol.js

Please note that the largest tegument protein for each virus (HSV-1 UL36, HCMV UL48, and KSHV ORF64) was not run due to GPU memory restrictions.

For help on evaluating the predictions please check this quick tutorial

HSV-UL37 model

Protein category	Uniprot ID	HSV gene name	HSV protein name	Uniprot ID	HCMV gene name	HCMV protein name	Uniprot ID	KSHV gene name	KSHV protein name
AN	P04294	UL12		F5HF49	UL98		Q2HR95	ORF37
CEP1	P10191	UL7		F5HA10	UL103		F5HAI6	ORF42
CEP2	P10200	UL16		F5HAC7	UL94		F5HEF2	ORF33
CEP3	P04289	UL11		F5HI87	UL99		F5HHY1	ORF38
CVC1	P10201	UL17		Q6SW50	UL93		F5HB39	ORF32
CVC2	P10209	UL25		Q6SW65	UL77		Q2HRB3	ORF19
DNBI	P04296	UL29	ICP8	F5HDQ6	UL57	DBP	Q2HRD3	ORF6	DBP
DPOL	P04293	UL30		Q6SW77	UL54		Q2HRD0	ORF9
DUT	P10234	UL50		Q6SW70	UL72		Q2HR78	ORF54
EV45	P10229	UL45
gB	P10211	UL27	gB	F5HB53	UL55	gB	F5HB81	ORF8	gB
gC	P10228	UL44	gC
gD	Q69091	US6	gD
gE	P04488	US8	gE
gG	P06484	US4	gG
gH	P06477	UL22	gH	Q6SW67	UL75	gH	F5HAK9	ORF22	gH
gI	P06487	US7	gI
gJ	P06480	US5	gJ
gK	P68331	UL53	gK
gL	P10185	UL1	gL	F5HCH8	UL115	gL	F5HDB7	ORF47	gL
gM	P04288	UL10	gM	Q6SW43	UL100	gM	F5HDD0	ORF39	gM
gN	O09800	UL49.5	gN	F5HHQ0	UL73	gN	F5HFQ0	ORF53	gN
gO				F5HGP1	UL74
HELI	P10189	UL5		F5HEN8	UL105		Q2HR89	ORF44
HEPA	P10192	UL8		F5HIG1	UL102		Q2HR92	ORF40
ITP	P10221	UL37		Q6SW85	UL47		F5HEU7	ORF63
KITH	P0DTH5	UL23	TK				F5HB62	ORF21	TK
LTP	P10220	UL36		Q6SW84	UL48		Q2HR64	ORF64
MB43	P10227	UL43
MCP	P06491	UL19		F5HGT1	UL86		Q2HRA7	ORF25
NEC1	P10215	UL31		F5HFZ4	UL53		F5H982	ORF69
NEC2	P10218	UL34		Q6SW81	UL50		F5HA27	ORF67
NP03	P10187	UL3
NP04	P10188	UL4
OBP	P10193	UL9
PAP	P10226	UL42		F5HC97	UL44		F5HID2	ORF59
PORTL	P10190	UL6		F5HBR4	UL104		F5HGK9	ORF43
PRIM	P10236	UL52		F5HG51	UL70		F5HIN0	ORF56
RIR1	P08543	UL39	ICP6	Q6SW87	UL45		Q2HR67	ORF61
RIR2	P10224	UL40					F5HAW0	ORF60
RNB	P04487	US11
SCAF	P10210	UL26		Q6SW62	UL80		Q2HRB6	ORF17
SCP	P10219	UL35		F5HEN7	UL48A		Q2HR63	ORF65
SHUT	P10225	UL41
TEG1	P10230	UL46
TEG3	P04291	UL14
TEG4	P10205	UL21
TEG5	P10231	UL47
TEG6	P10239	UL55
TEG7	P10235	UL51		F5HEA3	UL71		F5H9W9	ORF55
TRM1	P10212	UL28		F5HC79	UL56		F5H9W4	ORF7
TRM2	P10217	UL33		F5HGI9	UL51		F5HGB6	ORF67.5
TRM3	P04295	UL15		F5HCU8	UL89		F5HGB6	ORF29
TRX1	P32888	UL38		F5HA93	UL46		F5H8Y5	ORF62
TRX2	P10202	UL18		F5HIN9	UL85		F5HGN8	ORF26
UNG	P10186	UL2		F5HI85	UL114		F5HFA1	ORF46
							Q2HRD5	K1
							Q77Q38	K12
							P0C788	K14	OX2V
							Q9QR69	K15
							Q2HRC7	K2	VIL6
							P90495	K3	MIR1
							Q98157	K4.1	VMI2
							F5HCJ2	K4.2	VCCL3
							F5HF36	K4
							P90489	K5	MIR2
							F5HET8	K6
							F5HDA4	K7
							Q2HR82	K8	KBZIP
							F5HB98	K8.1
							Q2HRC9	ORF10
							Q2HRC8	ORF11
							F5HGJ3	ORF16	vBCL2
							Q2HRB4	ORF18
							Q2HRC6	ORF2	DYR
							Q2HRB2	ORF20
							F5HIM6	ORF23
							F5HFD2	ORF24
							F5HDY6	ORF27
							F5HI25	ORF28
							F5HES7	ORF30
							Q2HRA1	ORF31
							Q2HR98	ORF34
							F5HCD4	ORF35
							F5HGH5	ORF36	vPK
							Q2HRD4	ORF4
							F5HDE4	ORF45
							Q2HR85	ORF48
							Q2HR83	ORF49
							F5HCV3	ORF50
							Q2HR80	ORF52
							Q2HR75	ORF57	ICP27
							F5HAD1	ORF58
							F5HG20	ORF66
							F5HF47	ORF69
							P90463	ORF70	TYSY
							F5HEZ4	ORF71	VFLIP
							Q77Q36	ORF72	VCYCL
							Q9QR71	ORF73	LANA1
							Q98146	ORF74	VGPCR
							Q9QR70	ORF75
							F5HF68	vIRF-1
							Q2HR71	vIRF-3
							F5HIC6	vIRF-2
							Q2HR73	vIRF-4
				Q6SW04	IRS1
				Q6SWD5	RL1
				F5HI32	RL10
				Q6SWD1	RL11
				Q6SWD0	RL12
				Q6SWC9	RL13
				F5HF23	RL5A
				Q6SWD3	RL6
				F7V995	RL8A
				F7V996	RL9A
				Q6SVX2	TRS1
				Q6SWC8	UL1
				Q6SWC0	UL10
				Q6SWB9	UL11	UL11P
				F5HC71	UL111A	IL10H
				Q6SW37	UL112-113	EP84
				Q6SW34	UL116
				F5HFA5	UL117
				F5HC14	UL119
				Q6SW31	UL120
				F5HD27	UL121
				Q6SW29	UL122	VIE2
				F5HCM1	UL123	VIE1
				F5HHS3	UL124
				Q6SWB8	UL13
				F5HCP3	UL130
				F5HET4	UL131A
				F5HGU6	UL132
				Q6SW10	UL133
				F5HAQ7	UL135
				F5HF35	UL136
				F5HGQ8	UL138
				Q6SW14	UL139
				Q6SWB7	UL14
				F5HCK7	UL140
				Q6RJQ3	UL141
				F5HHH2	UL142
				F5HAM0	UL144
				F5HF44	UL145
				F5HBX1	UL146	CXCL1
				F5HA06	UL147
				F5H8R0	UL147A
				F5H8Q3	UL148
				F5HE74	UL148A
				F5HAK6	UL148B
				F5HDE7	UL148C
				F5HHL7	UL148D
				Q6SW05	UL150
				F7V998	UL150A
				F5HAE6	UL15A
				F5HG68	UL16	UL16P
				F5HHT4	UL17
				F5HFB4	UL18
				F5HI68	UL19
				Q6SWC7	UL2
				F5H9Z4	UL20
				F5HH39	UL21A
				F5HF90	UL22A
				F5HDM3	UL23
				F5H9N4	UL24	VP22
				F5HGJ4	UL25	PP85
				F5HGG3	UL26
				Q6SWA4	UL27
				Q6SWA3	UL29
				F5HGC2	UL30
				U3KRG9	UL30A
				Q6SWA0	UL31
				Q6SW99	UL32	PP150
				Q6SW98	UL33
				F5HC16	UL34
				F5HE12	UL35
				F5HAY6	UL36	VICA
				Q6SW94	UL37	VGLI
				F5HG98	UL38
				Q6SWC6	UL4
				Q6SW92	UL40
				F5HFG3	UL41A
				F5HHZ3	UL42
				Q6SW89	UL43
				Q6SW82	UL49
				Q6SWC5	UL5
				Q6SW79	UL52
				Q6SWC4	UL6
				Q6SW73	UL69	ICP27
				Q6SWC3	UL7
				C1BEG3	UL74A
				Q6SW66	UL76
				F5HET1	UL78
				Q6SW63	UL79
				A0A1P7U1	UL8
				F5HBC6	UL82	PP71
				Q6SW59	UL83	PP65
				F5HB40	UL84
				Q6SW55	UL87
				F5H9F9	UL88
				F5H9T4	UL9
				F5HFJ8	UL91
				F5HAS7	UL92
				Q6SW48	UL95
				F5H8R6	UL96
				Q6SW46	UL97
				Q6SW03	US1
				F5HFJ7	US10
				Q6SVZ5	US11
				F5HE44	US12
				F5H9I4	US13
				F5HD92	US14
				F5HFH0	US15
				Q6SVZ0	US16
				F5H9N9	US17
				F5HE69	US18
				F5HAR3	US19
				F5HE05	US2
				F5HGH8	US20
				F5HHT6	US21
				F5HDC7	US22
				F5HAZ3	US23
				F5H8S6	US24
				F5H991	US26
				F5HDK1	US27
				F5HF62	US28
				F5HG95	US29
				F5HEU0	US3
				F5HB41	US30
				F5HAM4	US31
				F5HD03	US32
				F7V999	US33A
				F5HEF3	US34
				Q6SVX3	US34A
				Q6SW00	US6
				F5HDD3	US7
				F5HB52	US8
				F5HC33	US9
	P36313	RL1	ICP34.5
	P08393	RL2	ICP0
	P08392	RS1	ICP4
	P04290	UL13
	P10204	UL20
	P10208	UL24
	P10216	UL32
	P06492	UL48	VP16
	P10233	UL49	VP22
	P10238	UL54	ICP27
	P10240	UL56
	P04413	US3
	P04485	US1	ICP22
	P06486	US10
	P03170	US12	ICP47
	P06485	US2
	O09802	US8.5
	P06481	US9

This is a project in cooperation with the Topf lab at CSSB.

Predictions were run with Colabfold by the Steinegger lab:

• Mirdita M, Ovchinnikov S and Steinegger M. ColabFold – Making protein folding accessible to all. bioRxiv (2021) doi: 10.1101/2021.08.15.456425

As well as Deepmind for Alphafold2:

• Jumper et al. “Highly accurate protein structure prediction with AlphaFold.” 
  Nature (2021) doi: 10.1038/s41586-021-03819-2