KSHV_K3

Sequence coverage and plDDT Predicted alignment error (PAE) Model 1

 

Model 2

 

Model 3

 

Model 4

 

Model 5

 


Download files:
KSHV_K3_model_1.pdb
KSHV_K3_model_2.pdb
KSHV_K3_model_3.pdb
KSHV_K3_model_4.pdb
KSHV_K3_model_5.pdb
KSHV_K3_coverage_lDDT.png
KSHV_K3_PAE.png

This page uses 3Dmol.js : molecular visualization with WebGL by Nicholas Rego and David Koes
Bioinformatics (2015) 31 (8): 1322-1324

Predictions were run with Colabfold by the Steinegger lab:
Mirdita M, Ovchinnikov S and Steinegger M. ColabFold – Making protein folding accessible to all. bioRxiv (2021) doi: 10.1101/2021.08.15.456425

Alphafold2 was developed by Deepmind:
Jumper et al. “Highly accurate protein structure prediction with AlphaFold.” 
Nature (2021) doi: 10.1038/s41586-021-03819-2

1 thought on “KSHV_K3

  1. Alexa Wilson (McCormick lab, Dalhousie University)

    Would you be able to superimpose how K3 would sit in the ER or Cellular membrane? That would be really cool!

    Reply

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