Visualizing Alphafold predictions

To visualise the structure predictions, unzip the main file and then unzip the file corresponding to your gene of interest. Inside, you will find 5 .pdb files corresponding to five AF2 predictions ranked by their score. Rank1 is generally the one to look at first.

You can upload the .pdb file to 3D View to explore the 3D structure online or use standalone software like PyMOL or Chimera.

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