Alphafold HSV-1 strain 17+ predictions

UL55 prediction colored by the pLDDT confidence value (red=better)

In cooperation with the Topf lab at CSSB we currently running Alphafold2 on representative herpesvirus proteomes.

This file contains Alphafold2 predictions of all HSV-1 strain 17+ proteins in Uniprot except UL36 (since it is too big to be run on a 16GB GPU) run with Colabfold.

We thank the Steinegger lab:

  • Mirdita M, Ovchinnikov S and Steinegger M. ColabFold – Making protein folding accessible to all. bioRxiv (2021) doi: 10.1101/2021.08.15.456425

As well as Deepmind for Alphafold2:

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